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SRX2361008: Recovery of uncultivated bacterial and archaeal genomes substantially flesh out the tree of life: Sample Methanosarcina sp. UBA5
1 ILLUMINA (Illumina HiSeq 2000) run: 527,523 spots, 101.3M bases, 39.7Mb downloads

Design: Genome coverage :25.27 Assembly method and version: CLC de novo assembler4.4.1 Mapping method and version: BWA (BWA-MEM)0.7.12-r1039
Submitted by: University of Queensland
Study: Recovery of nearly 8,000 uncultivated bacterial and archaeal genomes substantially flesh out the tree of life
PRJNA348753 • SRP093542 • All experiments • All runs
show Abstracthide Abstract
Challenges in cultivating microorganisms have limited the phylogenetic diversity of currently available microbial genomes. This is being addressed by advances in sequencing throughput and computational techniques that allow for the cultivation-independent recovery of high-quality bacterial and archaeal genomes directly from metagenomic data. In this study, we recovered 7,903 uncultivated genomes from >1,000 metagenomes available from the Sequence Read Archive. These genomes increase the phylogenetic diversity of current archaeal and bacterial genome trees by >30%.
Sample: Uncultivated Methanosarcina sp. UBA5 genome recovered from DRX011531
SAMN06027134 • SRS1809386 • All experiments • All runs
Organism: Methanosarcina sp. UBA5
Library:
Name: DRX011531.b10
Instrument: Illumina HiSeq 2000
Strategy: WGS
Source: METAGENOMIC
Selection: RANDOM
Layout: PAIRED
Experiment attributes:
alignment_software: BWA (BWA-MEM)
Runs: 1 run, 527,523 spots, 101.3M bases, 39.7Mb
Run# of Spots# of BasesSizePublished
SRR5036870527,523101.3M39.7Mb2017-09-14

ID:
3444211

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